chr18 : 7,277,535 – 7,278,327
792 bp 30 TFs 2 linked genes
This 792 bp open chromatin element is linked to LAMA1 and PTPRM and is bound by 30 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LAMA1 160.2 kb Distal Multiome
PTPRM 289.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:7,272,535 – 7,283,327
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 228 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 155 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 201 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
ChIP hESC GSE26097.EOMES.hESC 262 bp overlap
ESR1 2 datasets
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 306 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 54 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 215 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 339 bp overlap
ChIP DE DE-FOXA2-2 268 bp overlap
ChIP DE DE-FOXA2-2 356 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 786 bp overlap
ChIP DE DE-GATA4-2 792 bp overlap
ChIP foregut GSE117136.GATA4.foregut 381 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 428 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 792 bp overlap
ChIP DE DE-GATA6-2 792 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 310 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 792 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 407 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 792 bp overlap
ChIP foregut GSE117136.GATA6.foregut 584 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 162 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 366 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 100 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 335 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 363 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 742 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 782 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 193 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 792 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 581 bp overlap