chr18 : 12,283,799 – 12,284,124
325 bp 78 TFs 3 linked genes
This 325 bp open chromatin element is linked to ENSG00000267069, ENSG00000280302, and ENSG00000289550 and is bound by 78 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000267069 4.1 kb Proximal Proximity
ENSG00000280302 4.4 kb Proximal Proximity
ENSG00000289550 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:12,278,799 – 12,289,124
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 3 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 216 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 180 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 200 bp overlap
ARID1B 3 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 325 bp overlap
ChIP K562 ENCFF938UXQ 233 bp overlap
ChIP K562 ENCFF938UXQ 325 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 138 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF980NSF 160 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 64 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 214 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 325 bp overlap
ChIP K562 ENCFF963TXY 282 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 325 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 256 bp overlap
ChIP K562 ENCFF673OEZ 325 bp overlap
CC2D1A 1 dataset
ChIP K562 ENCFF567XUT 272 bp overlap
CCNT2 1 dataset
ChIP K562 ENCFF199GSZ 255 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 266 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 293 bp overlap
CTCF 1 dataset
ChIP RWPE2 ENCFF911IEE 130 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 264 bp overlap
ChIP K562 ENCFF775HUO 276 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 170 bp overlap
EP300 4 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 250 bp overlap
ChIP K562 ENCFF226VMS 250 bp overlap
ChIP SK-N-SH ENCFF829RWA 231 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 141 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 162 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 287 bp overlap
ETV1 1 dataset
ChIP GIST GSE22441.ETV1.GIST 167 bp overlap
EZH2 1 dataset
ChIP ME-1_KD GSE128771.EZH2.ME-1_KD 256 bp overlap
FOSL1 4 datasets
ChIP K-562 ENCSR000BMV.FOSL1.K-562 111 bp overlap
ChIP K562 ENCFF455MKD 53 bp overlap
ChIP K562 ENCFF455MKD 325 bp overlap
ChIP K562 ENCFF728OTE 201 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 291 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 221 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 232 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 205 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 251 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 179 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 319 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 183 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 272 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 302 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 275 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 209 bp overlap
GATA2 9 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 249 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 168 bp overlap
ChIP K562 ENCFF088XQT 305 bp overlap
ChIP K562 ENCFF544PCK 216 bp overlap
ChIP SH-SY5Y ENCFF485YIB 325 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 281 bp overlap
ChIP SK-N-SH ENCFF764OZD 291 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 259 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 325 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 248 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 186 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 325 bp overlap
ChIP DE DE-GATA4-2 325 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 325 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 325 bp overlap
ChIP DE DE-GATA6-2 293 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 325 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 325 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 228 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 220 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 314 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 171 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 325 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 207 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 210 bp overlap
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 93 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR000BMG.HDAC2.K-562 177 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 325 bp overlap
HNRNPLL 1 dataset
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 218 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 188 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 140 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 270 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 108 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 82 bp overlap
ChIP K562 ENCFF830LVJ 180 bp overlap
KDM1A 3 datasets
ChIP K-562 GSE117944.KDM1A.K-562 127 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 174 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 218 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 148 bp overlap
ChIP K562 ENCFF464PIV 229 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 218 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 325 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 211 bp overlap
LYL1 1 dataset
ChIP Kasumi-1 GSE63484.LYL1.Kasumi-1 177 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 188 bp overlap
ChIP K562 ENCFF110LJS 298 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 155 bp overlap
MTA2 3 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 209 bp overlap
ChIP K-562 ENCSR113LAS.MTA2.K-562 218 bp overlap
ChIP K562 ENCFF880VZB 231 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 325 bp overlap
MYC 3 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 171 bp overlap
ChIP K-562 ENCSR000EGS.MYC.K-562 166 bp overlap
ChIP K-562 ENCSR000EZU.MYC.K-562 143 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 163 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 277 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 323 bp overlap
ChIP K562 ENCFF788MPU 325 bp overlap
ChIP K562 ENCFF866HRM 215 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 266 bp overlap
ChIP K562 ENCFF167YID 107 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 310 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 269 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF514URW 279 bp overlap
ChIP sigmoid colon ENCFF748YVT 272 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 254 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 223 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 117 bp overlap
RNF2 3 datasets
ChIP K562 ENCFF653BQJ 324 bp overlap
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 253 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 325 bp overlap
RUNX1 5 datasets
ChIP ME-1 GSE117138.RUNX1.ME-1 275 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 226 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 281 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 281 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 275 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 277 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 250 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 149 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 178 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 261 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 231 bp overlap
ChIP K562 ENCFF059YCJ 93 bp overlap
SPI1 1 dataset
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 175 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 170 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 224 bp overlap
TAL1 17 datasets
ChIP CD34 GSE52924.TAL1.CD34 185 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 183 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 98 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 292 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 274 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 247 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.TAL1.K-562_MYO1D-Hub_KO 175 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 250 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 270 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 318 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 289 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 276 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 234 bp overlap
ChIP K562 ENCFF620GMX 187 bp overlap
ChIP K562 ENCFF661CCK 155 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 275 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 220 bp overlap
TBL1XR1 1 dataset
ChIP K-562 ENCSR000EGB.TBL1XR1.K-562 121 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 287 bp overlap
ChIP K562 ENCFF931DJY 248 bp overlap
ChIP Kasumi-1 GSE43834.TCF12.Kasumi-1 126 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 180 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 288 bp overlap
ChIP K562 ENCFF319QZT 203 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 260 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 144 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 199 bp overlap
TRIM24 4 datasets
ChIP K-562 ENCSR957LDM.TRIM24.K-562 171 bp overlap
ChIP K-562 ENCSR907MZR.TRIM24.K-562 254 bp overlap
ChIP K562 ENCFF284DKY 242 bp overlap
ChIP K562 ENCFF616RIL 280 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR000BRW.TRIM28.K-562 120 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 173 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 173 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 142 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
ZEB2 5 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 325 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 325 bp overlap
ChIP K562 ENCFF795CMH 239 bp overlap
ChIP K562 ENCFF795CMH 298 bp overlap
ChIP K562 ENCFF975RXS 286 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 137 bp overlap
ChIP K562 ENCFF365NXQ 117 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 61 bp overlap
Huangfu Lab · Publications · Resources · Contact