chr18 : 31,944,232 – 31,944,894
662 bp 88 TFs 2 linked genes
This 662 bp open chromatin element is linked to TRAPPC8 and ENSG00000263823 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRAPPC8 1.1 kb Proximal Proximity
ENSG00000263823 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:31,939,232 – 31,949,894
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE64656.AR.LNCaP 68 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 86 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 231 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 500 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 415 bp overlap
ChIP K562 ENCFF938UXQ 363 bp overlap
ARID3A 2 datasets
ChIP K-562 ENCSR000EFY.ARID3A.K-562 266 bp overlap
ChIP K562 ENCFF728CDS 345 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 602 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 193 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 177 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 177 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 129 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 124 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 235 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 127 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 69 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 228 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 357 bp overlap
ChIP K562 ENCFF673OEZ 219 bp overlap
CHD1 2 datasets
ChIP K-562 ENCSR000AQD.CHD1.K-562 115 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 139 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 164 bp overlap
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 249 bp overlap
CTCF 4 datasets
ChIP GM10248 ENCFF226VLZ 165 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 104 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 215 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 160 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 328 bp overlap
ChIP K562 ENCFF739JDE 497 bp overlap
ChIP K562 ENCFF775HUO 393 bp overlap
E2F1 4 datasets
ChIP K-562 ENCSR563LLO.E2F1.K-562 286 bp overlap
ChIP K562 ENCFF163BSY 424 bp overlap
ChIP K562 ENCFF163BSY 451 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 99 bp overlap
E2F6 1 dataset
ChIP K562 ENCFF136LTS 325 bp overlap
EGR1 4 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 249 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 451 bp overlap
ChIP K562 ENCFF895KGN 385 bp overlap
ELF4 1 dataset
ChIP K-562 ENCSR638QHV.ELF4.K-562 237 bp overlap
ESR1 1 dataset
ChIP MCF-7_LTED GSE86538.ESR1.MCF-7_LTED 138 bp overlap
FOSL1 2 datasets
ChIP K562 ENCFF455MKD 391 bp overlap
ChIP K562 ENCFF455MKD 628 bp overlap
FOXA1 3 datasets
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 64 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 114 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 161 bp overlap
GATA1 8 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 218 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 138 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 248 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 149 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 537 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 454 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 346 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 617 bp overlap
ChIP DE DE-GATA4-2 491 bp overlap
ChIP foregut GSE117136.GATA4.foregut 293 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 278 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 540 bp overlap
ChIP DE DE-GATA6-2 533 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 617 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 578 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 573 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 492 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 576 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 230 bp overlap
ChIP K562 ENCFF928TKZ 457 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
ChIP K562 ENCFF968WBH 347 bp overlap
HOXB13 3 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 97 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 139 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 53 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 354 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 173 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 423 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 282 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF133OLU 445 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 345 bp overlap
KMT2A 8 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 270 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 192 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 287 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 326 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 146 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 126 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 254 bp overlap
L3MBTL2 3 datasets
ChIP HEK293T ENCFF482NJV 541 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 318 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 358 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 215 bp overlap
MAX 2 datasets
ChIP K562 ENCFF524IJO 397 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 102 bp overlap
MED1 1 dataset
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 228 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 160 bp overlap
ChIP K562 ENCFF320GSD 51 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 300 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 72 bp overlap
MYC 3 datasets
ChIP K562 ENCFF640IEK 157 bp overlap
ChIP NB69 GSE138295.MYC.NB69 147 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 128 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 260 bp overlap
ChIP K562 ENCFF788MPU 405 bp overlap
ChIP K562 ENCFF866HRM 445 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 153 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 158 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 146 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 173 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 262 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 165 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 174 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 176 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 97 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 177 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 148 bp overlap
ChIP K562 ENCFF236IUS 233 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 359 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 63 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 81 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 217 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 206 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 95 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 453 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 553 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 534 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 447 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 556 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 472 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 513 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 648 bp overlap
SMARCA4 6 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 455 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 253 bp overlap
ChIP K562 ENCFF316MCJ 485 bp overlap
ChIP K562 ENCFF506JCB 257 bp overlap
ChIP K562 ENCFF506JCB 379 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 164 bp overlap
SMARCA5 1 dataset
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 244 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 347 bp overlap
SMARCC2 2 datasets
ChIP K562 ENCFF368GSR 497 bp overlap
ChIP K562 ENCFF368GSR 355 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 323 bp overlap
ChIP K562 ENCFF690CFF 517 bp overlap
SNIP1 1 dataset
ChIP K562 ENCFF551HCU 281 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 259 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 437 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 203 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF620GMX 385 bp overlap
TBL1XR1 1 dataset
ChIP K562 ENCFF899VEC 331 bp overlap
TCF12 1 dataset
ChIP K562 ENCFF931DJY 391 bp overlap
TCF7 1 dataset
ChIP HepG2 ENCFF628OFQ 68 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 365 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 401 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 281 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 187 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 292 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 269 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 323 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 568 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 441 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 199 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 465 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 421 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 289 bp overlap
ZFP91 2 datasets
ChIP K-562 ENCSR898XMH.ZFP91.K-562 361 bp overlap
ChIP K562 ENCFF501CDP 137 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 89 bp overlap
ZNF184 1 dataset
ChIP K-562 ENCSR621ATC.ZNF184.K-562 134 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 148 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 662 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 412 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 630 bp overlap
ZSCAN29 2 datasets
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 192 bp overlap
ChIP K562 ENCFF797SOU 392 bp overlap
Huangfu Lab · Publications · Resources · Contact