chr18 : 48,802,644 – 48,803,302
658 bp 62 TFs 2 linked genes
This 658 bp open chromatin element is linked to SMAD7 and CTIF and is bound by 62 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SMAD7 145.5 kb Distal Multiome
CTIF 264.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:48,797,644 – 48,808,302
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 213 bp overlap
BCL6 3 datasets
ChIP CD4 GSE59933.BCL6.CD4 130 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 158 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 71 bp overlap
BRD4 4 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 85 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 398 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 339 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 415 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 271 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 228 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 298 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 282 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 283 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 188 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 172 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 399 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF432UGA 72 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 314 bp overlap
ESR1 10 datasets
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 219 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 345 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 226 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 499 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 425 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 614 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 383 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 590 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 524 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 123 bp overlap
ESR2 4 datasets
Motif DE_24h DE_24h-ESR2_MA0258.2 15 bp overlap
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 300 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 125 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 185 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 181 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 338 bp overlap
ChIP DE DE-GATA6-2 411 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 280 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 397 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
IKZF1 6 datasets
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 381 bp overlap
ChIP K562 ENCFF348IBL 501 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 420 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 484 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 522 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 468 bp overlap
MED1 1 dataset
ChIP CD4_Th1_DMSO GSE62482.MED1.CD4_Th1_DMSO 60 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 266 bp overlap
MGA 2 datasets
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 233 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 305 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 133 bp overlap
Mafg 4 datasets
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 68 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 328 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF542ZFO 88 bp overlap
ChIP GM12892 ENCFF542ZFO 294 bp overlap
ChIP thyroid gland ENCFF979LRR 282 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 347 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 521 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 282 bp overlap
REST 3 datasets
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 120 bp overlap
ChIP neural ENCSR000BTV.REST.neural 457 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 413 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 233 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 658 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 574 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 638 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 474 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 637 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 651 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 559 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 277 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 230 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 304 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
ChIP neural cell ENCFF795YGY 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 331 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 437 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 224 bp overlap
TBX1 2 datasets
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX20 2 datasets
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX4 2 datasets
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 96 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 387 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 501 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 312 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 227 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF317 2 datasets
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 144 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 159 bp overlap
Zic1::Zic2 4 datasets
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 4 datasets
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap